Oscilloscopes are not (generally) smart... You should (when measuring the frequency) make sure the trigger point is midway on the trace to ensure that the oscilloscope is not reading undershoot or overshoot (bounce) as I suspect it was. This comes with practice and knowledge...
The Tektronix website has some good reference material. See
https://www.tek.com/en/documents/primer/setting-and-using-oscilloscope and
https://www.tek.com/en/documents/primer/oscilloscope-basics for examples. There is also a Learning Centre
https://www.tek.com/en/support/learning-center.
There is other material around - but I would go for the major manufacturers of oscilloscopes to ensure you are not getting suckered into bad practices.
The website you want is:
https://www.zimmers.net/anonftp/pub/cbm/schematics/computers/pet/univ/index.html.
You have identified that your board assembly is 8032080. This makes it either an 8032, a Univ or a Univ2. Check each of the three Zimmers directories until you find the one with the assembly/parts list matching your board.
The parts list (if you look at 8032080-02) identifies a PCB of 8032079 and a logic (schematic) diagram of 8032081. These are the diagrams you want...
What we have just been looking at was:
https://www.zimmers.net/anonftp/pub/cbm/schematics/computers/pet/univ/8032081-08.gif.
Glad your machine is a 40-column machine. I was just querying UC3 pin 1 that was LOW in a previous post.
If the machine is 40 column (40C) UC3 pin 1 will be connected to 0V via J7 - so this is correct. In 80 column mode (80C) UC3 pin 1 should be connected to BA0 (via J8) and it should have had a signal on it...
If UC3 pin 3 truly doesn't have a clock of 1 MHz on it, we need to work our way back to find out where it has gone!
It says it comes from sheet -06.
It does, and it doesn't! If you chase this signal back to sheet 6, it comes (ultimately) from sheet -01 - so that is where we need to go to.
Check the 6502 CPU pin 39. The 1 MHz clock should be present here.
This signal is then buffered by UD15. The clock signal goes 'in' on pin 1 and comes 'out' from pin 2. Check both these pins for our 1 MHz clock.
If it is present on UD15 pin 2, there must either be a break in the PCB track or something is dragging the signal HIGH or LOW.
You can 'chase' the signal from sheet -01 to sheets -02, -03 and -06. Look for the signal on these sheets (IC pins) and see if the 1 MHz clock is present or not.
Note that resistor R13 must be present and working. The resistor pulls up the signal to +5V, and UD15 pulls it down to 0V (when required).
>>> We are both doing this for fun, I hope.
Yep. Well, I am trying to pass on my knowledge to others as we try to find the fault. Keep asking the questions - I am happy to answer them...
Dave