There is a company that still manufacturers alignment disks. I don't know how much they cost as I am still operating using 15-20 ( as I wear out, or the disks get damaged, I make a note of the damage, and continue to use the undamaged parts of alignment disks) alignment disks that I have remaining from the ones that I bought back in the 80s and 90s. They cost about $100 each back then.
To use an analog alignment disk, you need a drive exerciser, or a routine to command the drive to move to specific tracks on the alignment disk so you can observe waveforms with a 100mhz (or better) dual trace oscilloscope (Tektronix 465 being the classical standard for drive alignment) or a dedicated drive tester (mine costed about $1000-$1500 back around 1983). And the alignment disk.
I've been using a dedicated drive tester to read the drives, and a drive exerciser from another company to control drives since the 1980s. The companies that made the these tools have been out of business for decades now. And I'm worried about how long they are going to keep operating. I don't have circuit diagrams for either tool, and the drive tester died twice in the past, and had to be sent to the Manufacturer at the time for repairs. In anticipation of the final death of this hard working equipment, I purchased a used 150mhz Tektronix 2445 scope (and a donor 2445 scope to use for parts) and am looking for replacements/spares for the drive tester and exerciser.
Aligning drives using an oscilloscope is many times slower than using the dedicated drive tester, but may be necessary in the future if I'm going to continue servicing floppy drives. In a production environment, I found it much faster to use the dedicated drive testing equipment than the oscilloscope that I learned to do the work on. I never used a scope before for repairing floppy drive logic boards, but I've accumulate a pile of dead logic boards over the years that I was not able to fix using a DMM and logic probe (which is all I've needed for most repairs). I'm going to use the scope to hopefully track down the problems on the boards I could not fix before (about 15-20 logic boards accumulated).
With your previous experience, I'd think you'd be able to write the drive control program and use your computer to control the floppy drive. If you have a good 100 mhz dual trace scope, all you would need to align/verify your drives are in alignment (or to be able to adjust the alignment) is a analog alignment disk. I haven't bought any lately (as I wrote previously) but I've been to the manufacturer's website, and seem to remember a price somewhere between $70-$100 for a 8" analog alignment disk. I charge about $100 to align a 8" single-side drive, or $150 for a simple repair and alignment with an extra fee of between $100-$200 to repair, exchange or out-right replace a defective logic board. If you can do your own alignments for the cost of an alignment disk, that would be a good investment.