Apple had a massive, raging case of NIH Syndrome in the early 80's. Remember, the 3.5" Microfloppy drive only ended up in the Mac at all because of Apple finally admitting at the last minute that Fileware, aka, Twiggy, had been a total waste of time and they were never going to get it to work acceptably, but even that realization didn't stop them from insisting that some of the technical dead-ends from that project (mainly the multi-speed drive motor idea) be incorporated into the Sony mechanism.
(Apple shuttered their catastrophically ill-fated hard disk division at about the same time, the one that, so far as I know, resulted in the "Widget" drive some Lisa models are cursed with as the only fully-shipped product.)
Maybe at the time the whole affair looked like it made sense, but in the rear-view mirror it comes across an awful lot like all the over-the-top praise Apple got for the "low parts count" Disk II controller went to someone's head and stuck there a little too hard.
(I have to admit I'm young enough that at the time I never really got it why the Disk II was such a big deal. Around the time it came out fully discrete "board full of chips" disk controllers were being replaced by much more integrated devices like the WD1771/1791, and Apple's solution *always* came with the trade-off of requiring the CPU to do a lot more work anyway, so, yeah, but apparently it made Apple management decide they were destined to be the One True God of Magnetic Storage.)
Since there seems to be some confusion, the Central Point Deluxe Option Board/Transcopy board is a flux-level device. In that respect it is similar to the Kryoflux, Super Card, FluxEngine, Greaseweazle, and so on. That means it is in the same boat regarding floppy drive compatiblity.
To be clear I knew the DOB was a flux device, or at least I assumed it was, but I never owned one and on the forums today where people complain it's about modern devices. I didn't know that there were specific recommendations at the time regarding floppy compatibility for the DOB, if there were that certainly supports the idea that there could be a real issue there.
The original Apple 400/800k drives actually spun at between 400-ish and 600-ish RPM, almost twice as fast as a standard 300RPM fixed speed drive, so perhaps that has some bearing on making disks written in them harder to read. (Per Chuck's comment regarding response being proportional to media speed.)