The scope will help you for a while. You can re-solder pin 9.
You are looking to have the scope CH1 on pin 9 to get the most stable lock you can and using ch2 as your probe. The two places to probe around are the jumper block, especially its right hand side where the pin 9 connection enters at P and around the IC's pin 1 and pin 2 A4 and pins 10,11 & 12 A3, to see if there is an interfering signal that matches what you see on Ch1(pin 9,D2).
It raises the question as to whether it is likely a gate, like A4 for example could develop signal cross talk between two inputs pin 1 and pin 2 alone, it doesn't happen that I have seen.....yet, not impossible but a rare one, more often the gates go open.
There is one situation though, where you might not find a matching interfering pulse because , under a certain circumstance, it could be composed of all , or a mix, the pulses feeding all the IC pins of IC's A4 and A3:
IC's inputs can appear to have severe interactions of all inputs, if the +5V power supply to the IC has failed, or become disconnected.
But, we know that the IC A4 is powered by 5V because:
1) you have checked that 5V supply and
2) it runs from the same +5V regulator as U2......still it could pay to check it again at the IC pins, where they enter the IC body with the meter just in case of a dry solder join to pin 14 of A4 or pin 14 of A3.
It is possible that inside a chip package, the IC die could lose its connection to +5V power and that would also do it and create a failure mode of interacting inputs.
So , if, with the scope, you cannot find an exact single matching interfering pulse, and IC's A4 and A3 have definite 5V power on their pin 14's, as the pin enters the IC plastic body, then I would suspect that either IC 3 or IC4 had lost power to its die internally.
The practical way to tell is to just solder suck and free Pin 11 of A3 and check the interference, if ok solder it back up and then check Pin 1 of A4 the same way.
I would guess if it is not IC' A3 or A4 in some of the ways above being defective, then likely it is corrosion etc under the switch block.